In early May 1999, the Pakistani army, at the instigation of Gen. Pervez Musharraf, seizes a strategic height called Kargil in the Indian province of Kashmir. This creates a grave crisis between Pakistan in India. By early July, the CIA picks up intelligence that Pakistan is preparing to launch nuclear missiles against India if necessary. Pakistani Prime Minister Nawaz Sharif comes to the US on July 4 to meet with President Clinton about this. Clinton is livid and yells at Sharif for breaking promises, not only about Kashmir but also about failing to help with bin Laden. According to notes taken at the meeting, Clinton says he had “asked repeatedly for Pakistani help to bring Osama bin Laden to justice… [Sharif] promised often to do so but had done nothing. Instead, the ISI worked with bin Laden and the Taliban to foment terrorists.” Clinton threatens to release a statement calling worldwide attention to Pakistan’s support for terrorists. He adds, “You’ve put me in the middle today, set the US up to fail, and I won’t let it happen. Pakistani is messing with nuclear war.” Sharif backs down and immediately withdraws his troops from Kargil, ending the crisis. But as a result, Sharif becomes deeply unpopular in Pakistan. A few months later he will be ousted in a coup by Musharraf (see October 12, 1999), the general who started the crisis in the first place. [Coll, 2004, pp. 476-478]
Early December 1999: US Takes Action to Stop Al-Qaeda Millennium Bombing Plot
The CIA learns from the Jordanian government about an al-Qaeda millennium bombing plot in that country (see November 30, 1999). Further, the CIA concludes more attacks are likely soon, including some inside the US (see December 8, 1999). Counterterrorism “tsar” Richard Clarke is told of this, and he implements a plan to neutralize the threat. [Clarke, 2004, pp. 205, 211] The plan, approved by President Clinton, focuses on harassing and disrupting al-Qaeda members throughout the world. The FBI is put on heightened alert, counterterrorism teams are dispatched overseas, a formal ultimatum is given to the Taliban to keep al-Qaeda under control, and friendly intelligence agencies are asked to help. There are Cabinet-level meetings nearly every day dealing with terrorism [Washington Post, 4/2/2000; Associated Press, 6/28/2002] All US embassies, military bases, police departments, and other agencies are given a warning to be on the lookout for signs of an al-Qaeda millennium attack. One alert border agent responds by arresting terrorist Ahmed Ressam (see December 14, 1999), which leads to the unraveling of several bombing plots (see December 15-31, 1999). No terror attacks occur. However, Clarke claims the FBI generally remains unhelpful. For example, around this time the FBI says there are no websites in the US soliciting volunteers for training in Afghanistan or money for terrorist front groups. Clarke has a private citizen check to see if this is true, and within days, he is given a long list of such websites. The FBI and Justice Department apparently fail to do anything with the information. [Newsweek, 3/31/2004]
December 8, 1999: CIA Concludes that Bin Laden Plans Many Imminent Attacks, Including Some inside US
The CIA’s Counter Terrorism Center concludes in a classified report that bin Laden wants to inflict maximum casualties, cause massive panic, and score a psychological victory. He may be seeking to attack between five and 15 targets on the Millennium. “Because the US is bin Laden’s ultimate goal… we must assume that several of these targets will be in the US.” [Time, 8/12/2002; US Congress, 7/24/2003] CIA Director George Tenet delivers this warning to President Clinton. Author Steve Coll later comments that Tenet also “grabbed the National Security Council’s attention with that prediction.” [Coll, 2004, pp. 482] The US takes action in a variety of ways (see Early December 1999). It will turn out that bin Laden did plan many attacks to be timed for the millennium celebrations, including ones inside the US, but all failed (see December 31, 1999-January 1, 2000).
December 9, 1999: President Clinton Warned about Al-Qaeda Operatives Living in US
As an al-Qaeda millennium plot is broken up in Jordan (see November 30, 1999), attention is focused on the fact that two of the plotters were long time US residents. National Security Adviser Sandy Berger sends a memo to President Clinton about the two men, Raed Hijazi and Khalil Deek. Hijazi had lived in California and then moved to Boston to drive a taxi there for several years. The 9/11 Commission will say Berger tells Clinton was a naturalized US citizen who had “been in touch with extremists in the United States as well as abroad.” Later in the month, counterterrorism “tsar” Richard Clarke will warn Berger in an e-mail, “Foreign terrorist sleeper cells are present in the US and attacks in the US are likely.” [9/11 Commission, 7/24/2004, pp. 179, 501] Deek is arrested on December 11 (see December 11, 1999), but he will eventually be released without being charged (see May 2001). A few days later, Clarke authorizes a study that looks into Deek’s connections, but no action will be taken when it is discovered Deek’s next-door neighbor is still living in Anaheim, California, and running an al-Qaeda sleeper cell there (see December 14-25, 1999). Similarly, while Hijazi will be arrested overseas some months later (see September 2000), US intelligence seems oblivious to the other al-Qaeda operatives who have been his roommates and fellow taxi drivers in Boston (see June 1995-Early 1999 and October 2000). One of them, Nabil al-Marabh, will apparently go on to have a major role in the 9/11 plot (see for example January 2001-Summer 2001 and Early September 2001). Investigators will also fail to act on knowledge of financial transactions between Hijazi and three of the 9/11 hijackers (see Spring 2001).
January 6-9, 2000: Top CIA and Clinton Cabinet Officials Repeatedly Briefed about Al-Qaeda Summit in Malaysia
On January 6, 2000, the CIA station in Malaysia begins passing details from the Malaysian government’s surveillance of the al-Qaeda summit in Kuala Lumpur, Malaysia, to the CIA Counterterrorist Center (CTC) (see January 5-8, 2000 and January 5-8, 2000 and Shortly After). Cofer Black, head of the CTC, orders that he be continually informed about the meeting. CIA Director George Tenet is frequently informed as well. They are given continual updates until the meeting ends on January 8. [Stern, 8/13/2003] National Security Adviser Sandy Berger, FBI Director Louis Freeh, and other top officials are briefed, but apparently President Clinton is not. [Bamford, 2004, pp. 225-26] However, it appears that the CIA deliberately and repeatedly fails to tell the FBI that one attendee, future 9/11 hijacker Khalid Almihdhar, has an active visa to visit the US (see Mid-July 2004, January 6, 2000, and January 5-6, 2000). No evidence will be presented suggesting anyone else outside the CIA is told this crucial fact either. The Malaysia summit ends on January 8. [9/11 Commission, 7/24/2004, pp. 237] Officially, the CIA will later claim to have lost future hijackers Alhazmi and Almihdhar as they left the meeting (see January 8, 2000). However, Almihdhar will later report back to al-Qaeda that he thought he was followed to the US (see Mid-July 2000). It will not be reported whether any of the other attendees are monitored after leaving the meeting.
March 2000: US Team Plans to Capture Al-Qaeda Leader in Afghanistan, but Mission Is Aborted
CIA official Gary Berntsen and a US Army Special Forces major known as Brock (an apparent reference to Maj. Brock Gaston) lead a six-person team with the mission to enter Afghanistan and capture one of bin Laden’s top aides. The exact target is not specified; the team is expected to take advantage of whatever opportunities present themselves. The team passes through Uzbekistan and Tajikistan, then meets up with Northern Alliance forces in the part of Afghanistan still under their control. But from the very beginning they encounter resistance from a CIA superior officer who is based in a nearby country and is in charge of CIA relations with the Northern Alliance. Known publicly only by his first name Lawrence, he apparently had a minor role in the Iran-Contra affair and has a personal dispute with Gaston. The team stays at Ahmad Shad Massoud’s Northern Alliance headquarters high in the Afghan mountains for about two weeks. However, they never have a chance to cross into Taliban territory for their mission because Lawrence is sending back a stream of negative messages to CIA headquarters about the risks of their mission. A debate ensues back at headquarters. Cofer Black, head of the CIA’s Counter Terrorist Center, and his assistant Hank Crumpton support continuing the mission. But CIA Director George Tenet and his assistant Jim Pavitt cancel the mission on March 25. Upon returning to the US, Berntsen, Gaston, Black, and Crumpton formally call for Lawrence’s dismissal, but to no effect. Berntsen will later comment that Black and Crumpton “had shown a willingness to plan and execute risky missions. But neither CIA Director George Tenet nor President Bill Clinton had the will to wage a real fight against terrorists who were killing US citizens.” [CNN, 12/15/2001; Berntsen and Pezzullo, 2005, pp. 43-64]
March 25, 2000: Clinton Visits Pakistan Despite Fears of ISI Ties to Al-Qaeda, Gives Warning to Pakistani President Musharraf
President Clinton visits Pakistan. It is later revealed that the US Secret Service believes that the ISI was so deeply infiltrated by Islamic militant organizations, that it begs Clinton to cancel his visit. Specifically, the US government determined that the ISI had long-standing ties with al-Qaeda. When Clinton decides to go over the Secret Service’s protestations, his security takes extraordinary and unprecedented precautions. For instance, an empty Air Force One is flown into the country, and then Clinton arrives in a small, unmarked plane. [New York Times, 10/29/2001] In an effort not to be seen endorsing Musharraf, he stays in Pakistan for only five hours after visiting India for five days, and he is not photographed shaking hands with Musharraf. Clinton gives a brief speech televised nationally in Pakistan, warning that Pakistan cannot use jihad as foreign policy. “This era does not reward people who struggle in vain to redraw borders with blood,” he says. [Rashid, 2008, pp. 49-50] Clinton meets privately with Pakistani President Pervez Musharraf. Clinton will later recall that he told Musharraf, “If he chose to pursue a peaceful, progressive path, I thought he had a fair chance to succeed, but I told him I thought terrorism would eventually destroy Pakistan from within if he didn’t move against it.” Musharraf is non-committal on most issues Clinton tries to discuss with him. [Clinton, 2005, pp. 902-903]
April 2, 2000: Some Complain Clinton Administration Focusing Too Much on Terrorism
The Washington Post writes, “With little fanfare, [President Clinton] has begun to articulate a new national security doctrine in which terrorists and other ‘enemies of the nation-state’ are coming to occupy the position once filled by a monolithic communist superpower.” In his January 2000 State of the Union address, President Clinton predicts that terrorists and organized criminals will pose “the major security threat” to the US in coming decades. However, some claim that a “preoccupation with bin Laden has caused errors in judgment.” National Security Adviser Sandy Berger counters that the threat of large-scale terrorist attacks on US soil is “a reality, not a perception.… We would be irresponsible if we did not take this seriously.” Counterterrorism “tsar” Richard Clarke predicts that the US’s new enemies “will come after our weakness, our Achilles heel, which is largely here in the United States” (see April 2, 2000). [Washington Post, 4/2/2000]
September 2000: Neoconservative Think Tank Writes ‘Blueprint’ for ‘Global Pax Americana’
The neoconservative think tank Project for the New American Century writes a “blueprint” for the “creation of a ‘global Pax Americana’” (see June 3, 1997). The document, titled Rebuilding America’s Defenses: Strategies, Forces and Resources for a New Century, was written for the George W. Bush team even before the 2000 presidential election. It was written for future Vice President Cheney, future Defense Secretary Rumsfeld, future Deputy Defense Secretary Paul Wolfowitz, Florida Governor and Bush’s brother Jeb Bush, and Cheney’s future chief of staff Lewis Libby. [Project for the New American Century, 9/2000, pp. iv and 51 
]
Plans to Overthrow Iraqi Government – The report calls itself a “blueprint for maintaining global US preeminence, precluding the rise of a great power rival, and shaping the international security order in line with American principles and interests.” The plan shows that the Bush team intends to take military control of Persian Gulf oil whether or not Saddam Hussein was in power and should retain control of the region even if there is no threat. It says: “The United States has for decades sought to play a more permanent role in Gulf regional security. While the unresolved conflict with Iraq provides the immediate justification, the need for a substantial American force presence in the Gulf transcends the issue of the regime of Saddam Hussein.” The report calls for the control of space through a new “US Space Forces,” the political control of the internet, the subversion of any growth in political power of even close allies, and advocates “regime change” in China, North Korea, Libya, Syria, Iran and other countries. It also mentions that “advanced forms of biological warfare that can ‘target’ specific genotypes may transform biological warfare from the realm of terror to a politically useful tool” (see February 7, 2003). [Project for the New American Century, 9/2000 ; Sunday Herald (Glasgow), 9/7/2002]
Greater Need for US Role in Persian Gulf – PNAC states further: “The United States has for decades sought to play a more permanent role in Gulf regional security. While the unresolved conflict with Iraq provides the immediate justification, the need for a substantial American force presence in the Gulf transcends the issue of the regime of Saddam Hussein.”
‘US Space Forces,’ Control of Internet, Subversion of Allies – PNAC calls for the control of space through a new “US Space Forces,” the political control of the Internet, and the subversion of any growth in political power of even close allies, and advocates “regime change” in China, North Korea, Libya, Syria, Iran, and other countries.
Bioweapons Targeting Specific Genotypes ‘Useful’ – It also mentions that “advanced forms of biological warfare that can ‘target” specific genotypes may transform biological warfare from the realm of terror to a politically useful tool.”
‘A New Pearl Harbor’ – However, PNAC complains that thes changes are likely to take a long time, “absent some catastrophic and catalyzing event—like a new Pearl Harbor.” [Los Angeles Times, 1/12/2003]
Bush Will Claim a ‘Humble’ Foreign Policy Stance – One month later during a presidential debate with Al Gore, Bush will assert that he wants a “humble” foreign policy in the Middle East and says he is against toppling Saddam Hussein in Iraq because it smacks of “nation building” (see October 11, 2000). Around the same time, Cheney will similarly defend Bush’s position of maintaining President Clinton’s policy not to attack Iraq, asserting that the US should not act as though “we were an imperialist power, willy-nilly moving into capitals in that part of the world, taking down governments.” [Washington Post, 1/12/2002] Author Craig Unger will later comment, “Only a few people who had read the papers put forth by the Project for a New American Century might have guessed a far more radical policy had been developed.” [Salon, 3/15/2004] A British member of Parliament will later say of the PNAC report, “This is a blueprint for US world domination—a new world order of their making. These are the thought processes of fantasist Americans who want to control the world.” [Sunday Herald (Glasgow), 9/7/2002] Both PNAC and its strategy plan for Bush are almost virtually ignored by the media until a few weeks before the start of the Iraq war (see February-March 20, 2003).
September 7-October 2000: Predator Flights over Afghanistan Are Initiated Then Halted
An unmanned spy plane called the Predator begins flying over Afghanistan, showing incomparably detailed real-time video and photographs of the movements of what appears to be bin Laden and his aides. It flies successfully over Afghanistan 16 times. [9/11 Commission, 3/24/2004] President Clinton is impressed by a two-minute video of bin Laden crossing a street heading toward a mosque inside his Tarnak Farms complex. Bin Laden is surrounded by a team of a dozen armed men creating a professional forward security perimeter as he moves. The Predator has been used since 1996, in the Balkans and Iraq. One Predator crashes on takeoff and another is chased by a fighter, but it apparently identifies bin Laden on three occasions. Its use is stopped in Afghanistan after a few trials, mostly because seasonal winds are picking up. It is agreed to resume the flights in the spring, but the Predator fails to fly over Afghanistan again until after 9/11. [Washington Post, 12/19/2001; Clarke, 2004, pp. 220-21] On September 15, 2001, CIA Director Tenet apparently inaccurately tells President Bush, “The unmanned Predator surveillance aircraft that was now armed with Hellfire missiles had been operating for more than a year out of Uzbekistan to provide real-time video of Afghanistan.” [Washington Post, 1/29/2002]
