The ISI secretly assists the Taliban in its defense against a US-led attack. The ISI advises Pakistani President Pervez Musharraf that the Taliban will hold out against the US invasion until the spring of 2002 at least, and then will be able to hold out through a guerrilla war. Encouraged, Musharraf allows the ISI to continue to supply the Taliban on a daily basis. Pakistani journalist Ahmed Rashid will later explain, “The ISI justified its actions as stemming from fear of an Indian controlled Northern Alliance government after the overthrow of the Taliban. It also did not want to totally abandon the Taliban, its only proxy in Afghanistan. At the same time, the [Pakistani] army wanted to keep the Americans engaged, fearing that once Kabul had fallen, they would once again desert the region. With one hand Musharraf played at helping the war against terrorism, while with the other he continued to deal with the Taliban.”
ISI Supplies and Advisers – Fuel tankers and supply trucks cross the border so frequently that one border crossing in the Pakistani province of Balochistan is closed to all regular traffic so ISI supplies can continue to the Taliban stronghold of Kandahar with little notice. [Rashid, 2008, pp. 77-78] Between three and five ISI officers give military advice to the Taliban in late September. [Daily Telegraph, 10/10/2001] At least five key ISI operatives help the Taliban prepare defenses in Kandahar, yet none are punished for their activities. [Time, 5/6/2002] Secret advisers begin to withdraw in early October, but some stay on into November. [Knight Ridder, 11/3/2001] Large convoys of rifles, ammunition, and rocket-propelled grenade launchers for Taliban fighters cross the border from Pakistan into Afghanistan on October 8 and 12, just after US bombing of Afghanistan begins and after a supposed crackdown on ISI fundamentalists. The Pakistani ISI secretly gives safe passage to these convoys, despite having promised the US in September that such assistance would immediately stop. [New York Times, 12/8/2001]
US Aware of ISI Double Dealing – Rashid will later comment, “Thus, even as some ISI officers were helping US officers locate Taliban targets for US bombers, other ISI officers were pumping in fresh armaments for the Taliban.” On the Afghan side of the border with Pakistan, Northern Alliance operatives keep track of the ISI trucks crossing the border, and keep the CIA informed about the ISI aid. Gary Berntsen, one of the first CIA operatives to arrive in Afghanistan, will later say, “I assumed from the beginning of the conflict that ISI advisers were supporting the Taliban with expertise and material and, no doubt, sending a steady stream of intelligence back to [Pakistan].” [Rashid, 2008, pp. 77-78]
Taliban Collapses as ISI Aid Slows – Secret ISI convoys of weapons and other supplies continue into November. [United Press International, 11/1/2001; Time, 5/6/2002] An anonymous Western diplomat will later state, “We did not fully understand the significance of Pakistan’s role in propping up the Taliban until their guys withdrew and things went to hell fast for the Talibs.” [New York Times, 12/8/2001]
Early October-December 2001: US and Pakistan Do Little about Pakistani Nuclear Scientists Who Helped Al-Qaeda
In early October 2001, Secretary of State Colin Powell visits Pakistan and discusses the security of Pakistan’s nuclear weapons with Pakistani President Pervez Musharraf. He offers US technical assistance to improve the security of Pakistan’s nukes, but Pakistan rejects the offer. Powell also says that the CIA learned of a secret meeting held in mid-August 2001 between two Pakistani nuclear scientists and al-Qaeda leaders Osama bin Laden and Ayman al-Zawahiri (see Mid-August 2001). As a result of US pressure, Pakistan arrests the two scientists, Sultan Bashiruddin Mahmood and Chaudiri Abdul Majeed, on October 23. The Pakistani ISI secretly detains them for four weeks, but concludes that they are harmless and releases them. [Tenet, 2007, pp. 264-268; Frantz and Collins, 2007, pp. 269-271] In mid-November, after the Taliban is routed from Kabul (see November 13, 2001), the CIA takes over the headquarters there of Ummah Tameer-e-Nau (UTN), a charity founded by the two scientists. In addition to charity material, they find numerous documents and pieces of equipment to help build WMD, including plans for conducting an anthrax attack. [Levy and Scott-Clark, 2007, pp. 322] As a result, on December 1, CIA Director George Tenet, Rolf Mowatt-Larssen, head of the CIA Counterterrorist Center’s WMD branch, and a CIA analyst named Kevin make an emergency trip to Pakistan to discuss the issue. Accompanied by Wendy Chamberlin, the US ambassador to Pakistan, Tenet meets with Pakistani President Pervez Musharraf and urges him to take stronger action against the two scientists and their UTN charity. Musharraf reluctantly agrees, and the two men are rearrested. According to a 2007 book by Tenet, after being tested by a team of US polygraph experts and questioned by US officials, “Mahmood confirmed all we had heard about the August 2001 meeting with Osama bin Laden, and even provided a hand-drawn rough bomb design that he had shared with al-Qaeda leaders.” During the meeting, an unnamed senior al-Qaeda leader showed Mahmood a cannister that may have contained some kind of nuclear material. This leader shared ideas about building a simple firing system for a nuclear “dirty bomb” using commercially available supplies. [Tenet, 2007, pp. 264-268; Frantz and Collins, 2007, pp. 269-271] However, on December 13, the two scientists are quietly released again. The US does not officially freeze UTN’s assets until December 20, and Pakistan apparently follows suit a short time later (see December 20, 2001). [Wall Street Journal, 12/24/2001; Frantz and Collins, 2007, pp. 271]
October 1, 2001: Kashmir Suicide Attack Involves 9/11 Funder Saeed Sheikh
A suicide truck-bomb attack on the provincial parliamentary assembly in Indian-controlled Kashmir leaves 36 dead. It appears that Saeed Sheikh and Aftab Ansari, working with the ISI, are behind the attacks. [Pittsburgh Tribune-Review, 3/3/2002; Vanity Fair, 8/2002] Indian intelligence claims that Pakistani President Pervez Musharraf is later given a recording of a phone call between Jaish-e-Mohammed leader Maulana Masood Azhar and ISI Director Lt. Gen. Mahmood Ahmed in which Azhar allegedly reports the bombing is a “success.”
[United Press International, 10/10/2001]
October 8, 2001: Pakistani President Musharraf Assigns Taliban Sympathizer to Catch Terrorists Fleeing Afghanistan
Pakistani President Pervez Musharraf appoints a general sympathetic to the Taliban to seal off the Afghanistan border as US forces close in on al-Qaeda and Taliban militants on the other side. Ali Jan Orakzai is appointed on October 8, 2001, a day Musharraf responded to US pressure and fired some Islamist extremist officers, only to replace them with other Islamist extremist officers (see October 8, 2001). Orakzai, a friend and close adviser to Musharraf, will generally be known as someone who hates the US and sympathizes with the Taliban (see Late 2002-Late 2003). His instructions are to send troops to Pakistan’s tribal region next to Afghanistan to catch fleeing terrorists. On October 11, Pakistani helicopters will begin dropping soldiers in mountainous regions where no Pakistani soldiers had been to before. By December 2001, Orakzai will position more than 30,000 soldiers in the region. [London Times, 1/22/2005] However, when he ends his command of troops in the region in 2004, he will claim that his forces never even saw one Arab there (see January 22, 2005). Musharraf will finally fire him in 2007 for his ineffectiveness and militant sympathies (see July 19, 2007).
October 8, 2001: Musharraf Replaces Islamic Extremist Officers with More Loyal Islamic Extremist Officers
When Pakistani President Pervez Musharraf fires ISI Director Lt. Gen. Mahmood Ahmed on October 7, 2001 (see October 7, 2001), the US government and the international media hail the move as an attempt to purge Islamist extremists from the ISI. But authors Adrian Levy and Catherine Scott-Clark will comment in a 2007 book, “But far from it being an attempt to come clean with the US, it was a move that further entrenched the extremist element in the military, as well as strengthening the hand of Musharraf.” They point out that only Mahmood and Lt. Gen. Muzzaffar Usmani had the background and power base to stand up to Musharraf, and both of them are fired. [Levy and Scott-Clark, 2007, pp. 317-319] The new ISI director is Lt. Gen. Ehsan ul-Haq, a long-time friend of Musharraf. [Knight Ridder, 10/9/2001; Independent, 11/10/2001] While ul-Haq is presented as more moderate than Mahmood, media accounts from earlier in the year indicate that he is an Islamist extremist as well. He is quoted as saying, “There’s the American New World Order and this world order,” pointing to the Koran. “The whole of the globe belongs to Allah, and the whole of Allah’s law has to be executed on the globe.” [Boston Herald, 9/17/2001] And in a Newsweek profile, he proclaims that he is fighting a holy war for Allah, praising martyrdom and even saying that his forces in Kashmir have been aided by angels: “I have seen corpses where the heads were chopped off—not by man, but by angels.” [Newsweek International, 2/19/2001] Musharraf also promotes two loyal allies, Lt. Gen. Mohammed Aziz Khan, and Gen. Mohammed Yusaf. Aziz Khan, who is promoted to chairman of the joint chiefs of staff (a mostly ceremonial position), has been particularly close to Islamist groups, and had previously convinced Musharraf not to clamp down on the Taliban and bin Laden in the face of US pressure. Yusaf is promoted to vice chief of army staff. Both are members of the Tablighi Jamaat movement, which advocates replacing Pakistan’s civilian government with a clerical one. Sharifuddin Pirzada, Musharraf’s legal counselor, will comment in 2007, “Although Musharraf had been presented to the outside world as leader since the coup of 1999, it was really a cabal of generals who had pitched in and elevated him. But after 9/11, those who acted as balances and power breaks were disposed of or died accidentally, leaving Musharraf preeminent.” [Levy and Scott-Clark, 2007, pp. 317-319]
November 2001: Pakistan Promises to Seal Off Tora Bora Region in Exchange for US Aid
According to author Ron Suskind, some time in November the US makes a deal with Pakistani President Pervez Musharraf. Pakistan will seal off the passages to Pakistan from the Tora Bora region in Afghanistan where Taliban and al-Qaeda forces are expected to gather. In return, the US will give Pakistan nearly a billion dollars in new economic aid. Pakistan will fail to effectively seal the border in the next month (see December 10, 2001) and almost the entire force in Tora Bora will escape into Pakistan. [Suskind, 2006, pp. 58]
Late 2001: President Bush Fails to Fund Program to Reform Radical Islamist Boarding Schools in Pakistan
Not long after 9/11, US Ambassador to Pakistan Wendy Chamberlin proposes a substitute for the mostly private funding of madrassas [religious boarding schools] in Pakistan. There are over 10,000 madrassas in that country, and many of them teach a radical form of Islam that promotes Islamist militancy. Counterterrorism “tsar” Wayne Downing supports Chamberlin’s idea, and says the madrassa system is “the root of many of the recruits for the Islamist movement.” In early 2001, the Pakistani government approved a plan that would require the completely unregulated madrassas to register with the government for the first time, halt all funding from abroad (which often comes from militant supporters in Saudi Arabia), and modify their curricula to teach modern subjects such as math, science, and history. However, Pakistan lacks the money for an education system to replace the madrassas. In late 2001, President Bush promises Pakistani President Pervez Musharraf that he will fund a $300 million education plan. But the plan does not survive the White House budget request that year. The madrassas are not reformed in any way—even the plan to have them register is dropped. Pakistani journalist Ahmed Rashid will later comment, “The US State Department and USAID maintained the charade that Pakistan was actively carrying out reforms.” [Washington Post, 10/22/2004; Rashid, 2008, pp. 235-236]
December 2001-Spring 2002: Pakistani Government Allows Al-Qaeda and Taliban to Regroup in Pakistan’s Tribal Region
In December 2001, al-Qaeda and Taliban forces in Afghanistan are defeated in the battle of Tora Bora, and the survivors generally flee across the border into Pakistan’s tribal region. Many flee into the region of South Waziristan, since it is directly adjacent to Tora Bora and there are no Pakistani government forces guarding the border there (see December 10, 2001). In March 2002, several hundred more militants flee from Afghanistan into South Waziristan after Operation Anaconda (see March 2-13, 2002). They rebuild their central command there, particularly in a remote part of South Waziristan known as the Shakai valley. [New York Times, 6/30/2008] Pakistani journalist Ahmed Rashid will later describe South Waziristan: “With its high mountains, steep slopes, deep ravines littered with broken rock and shale, and its thick forests, it was an ideal hideout. Many of its valleys were virtually inaccessible, except along steep winding paths that required the agility of mountain climbers, and were easy to defend.” [Rashid, 2008, pp. 148, 268] In the spring of 2002, US intelligence begins reporting that large numbers of foreigners are hiding in South Waziristan and neighboring North Waziristan. But Gen. Ali Jan Orakzai, the commander of Pakistani forces in the area containing Waziristan, is skeptical. Born in the tribal region, Orakzai is said to be Pakistani President Pervez Musharraf’s close friend and main adviser on the region. Even in 2008, he will tell the New York Times that he considered the US warnings about al-Qaeda to be mere “guesswork” and that his soldiers “found nothing.” Former US intelligence officials will agree that nothing is found, because they say that Orakzai’s military forces only enter the region in large, slow-moving sweeps that are easily avoided by militants. Robert Grenier, CIA station chief in Pakistan at the time, will later suggest that Orakzai did not want to find the foreigners as this could have caused trouble, including a tribal uprising. Grenier will say, “Orakzai and others didn’t want to believe [the foreigners were there] because it would have been an inconvenient fact.” [New York Times, 6/30/2008]
December, 2001: US Congress Fails to Fund Plan to Strengthen Pakistani Government Control over Tribal Region
Pakistani President Pervez Musharraf meets with Wendy Chamberlin, the US ambassador to Pakistan, and asks for US support to help him extend his control over the tribal areas near the Afghanistan border. At the time, al-Qaeda and Taliban forces are being defeated in Afghanistan and fleeing to the tribal region. Musharraf suggests the local people can be bought off with basic government services such as schools, clinics, and roads, and that large cash rewards could be offered to locals who help track down fugitive militants. Musharraf claims he would need $40 million to implement such a plan. Chamberlin agrees, but Congress soon refuses to fund the money, and only gives $14 million for local law enforcement. Charlie Flickner, a Republican clerk on the House Appropriations Committee, successfully lobbies his Republican colleagues not to support it. One anonymous Democrat on the committee will later say: “We blew it. There was a window of opportunity, but we lost it by not funding them adequately.” The tribal areas soon become a strong base for al-Qaeda and the Taliban. [New Yorker, 7/28/2003]
December 2001: CIA Unable to Question Pakistani Nuclear Scientists Linked to Pro-Al-Qaeda Charity Front
After CIA Director George Tenet visits Pakistan and pressures the Pakistani government to take stronger action against the charity front Ummah Tameer-e-Nau (UTN) (see Early October-December 2001), the CIA learns more about the organization. The CIA was previously aware that the two prominent nuclear scientists who co-founded UTN, Sultan Bashiruddin Mahmood and Chaudiri Abdul Majeed, had met with Osama bin Laden and Ayman al-Zawahiri, and advised them on how to make a nuclear weapon (see Mid-August 2001). However, the CIA discovers that other nuclear scientists are also connected to UTN, including Mirza Yusef Beg, a former member of the Pakistan Atomic Energy Commission (PAEC), and Humayun Niaz, also formerly with the PAEC. At least two senior Pakistani military officers are also connected to UTN. All these men are brought in and questioned by US officials. But the CIA is unable to question two others connected to UTN, Muhammad Ali Mukhtar, a nuclear physicist who worked for the PAEC as a weapons expert, and Suleiman Asad, who worked at A. Q. Khan’s Kahuta Research Laboratories (KRL) in its weapons design division. The CIA reasons that these two scientists would be the type of nuclear bomb makers bin Laden was most interested in. However, the Pakistani government claims that the two are in Burma working on a top secret project and cannot be brought back to Pakistan for questioning. [Levy and Scott-Clark, 2007, pp. 320-321] Shortly after 9/11, Pakistani President Pervez Musharraf called one of the leaders of Burma and asked if the two scientists could be given asylum there. [New York Times, 12/9/2001] The CIA is also interested in talking to Hamid Gul, a former ISI director and UTN’s honorary patron, but Pakistan will not allow him to be questioned either, even though he had met with Mahmood in Afghanistan around the time Mahmood met with bin Laden and al-Zawahiri. As a result, the CIA is unable to learn just how much UTN could have assisted al-Qaeda with weapons of mass destruction. [Levy and Scott-Clark, 2007, pp. 320-321]
