At some point not long after Ali Mohamed is interviewed by the FBI in the autumn of 1993, the US government begins tracking his movements and monitoring his phone calls. Eventually, this surveillance will lead US investigators to the al-Qaeda cell in Nairobi, Kenya (see Late 1994). It is not clear which governmental agency does this. Meanwhile, he continues to have periodic contact with the FBI. They are especially interested in what he knows about bin Laden, as bin Laden’s importance becomes increasingly evident. [New York Times, 12/1/1998]
Late 1993-Late 1994: Ali Mohamed and Anas Al-Liby Scout Targets in Africa
In late 1993, bin Laden asks Ali Mohamed to scout out possible US, British, French, and Israeli targets in Nairobi, Kenya. Mohamed will later confess that in December 1993, “I took pictures, drew diagrams and wrote a report.” Then he travels to Sudan, where bin Laden and his top advisers review Mohamed’s work. In 1994, Mohamed claims that “bin Laden look[s] at a picture of the American Embassy and point[s] to where a truck could go as a suicide bomber.” A truck will follow bin Laden’s directions and crash into the embassy in 1998. Mohamed seems to spend considerable time in Nairobi working with the cell he set up there and conducting more surveillance. He also is sent to the East African nation of Djibouti to scout targets there, and is asked to scout targets in the West African nation of Senegal. [Los Angeles Times, 10/21/2000; Chicago Tribune, 12/11/2001; LA Weekly, 5/24/2002; 9/11 Commission, 6/16/2004] Much of his work seems to be done together with Anas al-Liby, a top al-Qaeda leader with a mysterious link to Western intelligence agencies similar to Mohamed’s. In 1996, British intelligence will pay al-Liby to assassinate Libyan leader Colonel Mu’ammar al-Qadhafi (see 1996), and then will let him live openly in Britain until 2000 (see Late 1995-May 2000). Al-Liby is said to be a “computer wizard” known for “working closely” with Mohamed. [New York Times, 2/13/2001; New York Times, 4/5/2001] L’Houssaine Kherchtou, an al-Qaeda member who later turns witness for a US trial (see September 2000), was trained in surveillance techniques in Pakistan by Mohamed in 1992. Kherchtou will claim he later comes across Mohamed in 1994 in Nairobi. Mohamed, Anas al-Liby, and a relative of al-Liby’s use Kherchtou’s apartment for surveillance work. Kherchtou sees al-Liby with a camera about 500 meters from the US embassy. [Washington File, 2/22/2001] Mohamed returns to the US near the end of 1994 after an FBI agent phones him in Nairobi and asks to speak to him about an upcoming trial. [Washington File, 2/22/2001]
1994: Al-Qaeda Leader Suspects Ali Mohamed Is Working with US Government
At some point in 1994, Mohammed Atef, one of al-Qaeda’s top leaders, refuses to let Ali Mohamed know what name and passport he is traveling under. Al-Qaeda operative L’Houssaine Kherchtou, testifying in a US trial in February 2001, will say that Atef “doesn’t want Abu Mohamed al Amriki [the American] to see his name, because he [is] afraid that maybe he is working with United States or other governments.” [Raleigh News and Observer, 10/21/2001]
February 4-5, 1994 and Shortly Afterwards: Bin Laden Almost Assassinated; Ali Mohamed Trains His Bodyguards
On February 4, 1994, a Libyan named Mohammed Abdullah al-Khulayfi attempts to assassinate Osama bin Laden in Sudan. He and two associates steal automatic weapons from two police stations in Sudan, killing two policemen in the process. Then they fire on worshippers at the mosque bin Laden usually attends, killing 16 and wounding 20 others, but bin Laden is not there. The next day, they shoot at police and one of bin Laden’s offices. That afternoon, the three men go to bin Laden’s house and fire on it. Bin Laden is there, but not in his usual spot which the attackers are targeting. Some of bin Laden’s guests and guards are shot, but none of them dies. Al-Khulayfi is shot and captured by Sudanese police, while his two associates are killed. The three men belonged to a rival Islamist group who apparently believed bin Laden was not fanatical enough. Bin Laden later tells a friend that he believes Egyptian intelligence was behind the attack. The CIA suspect Saudi intelligence was responsible. Within days of the attack, double agent Ali Mohamed flies from California to Sudan and begins training bin Laden’s bodyguards to better protect him. Mohamed also leads an investigation into al-Khulayfi’s past and learns that he had fought with bin Laden and the mujaheddin in Afghanistan in the 1980s. [Gunaratna, 2003, pp. 45-46; Wright, 2006, pp. 192-193]
Shortly After February 1994: Ali Mohamed Sets up Meeting between Bin Laden and Hezbollah
In February 1994, double agent Ali Mohamed goes to Sudan and trains Osama bin Laden’s bodyguards (see February 4-5, 1994 and Shortly Afterwards). While there, Mohamed arranges security for a meeting between bin Laden and Imad Mugniyah, the security chief for the Lebanese militant group Hezbollah who is said to have directed the 1983 bombing of the US Marine barracks in Beirut, Lebanon (see April 18-October 23, 1983). Bin Laden and Mugniyah are said to discuss upcoming operations. Mugniyah is believed to be involved in the hijacking of an Air India jet in 1999 where passengers will be exchanged for three militants in Indian prisons, including Saeed Sheikh, who will be the paymaster for 9/11 (see December 24-31, 1999). Mohamed will later claim in court that Hezbollah subsequently provided explosives training for al-Qaeda and Islamic Jihad. [Los Angeles Times, 10/21/2000; Raleigh News and Observer, 10/21/2001; Chicago Tribune, 12/11/2001; LA Weekly, 5/24/2002] A number of al-Qaeda operatives train with Hezbollah in Lebanon after this meeting (see Mid-1990s). Dan Benjamin and Steve Simon, director and senior director of the National Security Council’s counterterrorism team, will later write that “The meeting between the two preeminent terrorists of the era reportedly did take place, and there was an agreement to cooperate. But there the record ends; there is little evidence that a long-term bond between the Sunni and Shiite groups was ever formed.” [Benjamin and Simon, 2005, pp. 128] Mohamed will return to the US after an FBI agent phones him and asks to speak to him about an upcoming trial (see December 9, 1994).
Late 1994: Tapped Phones Reveal Link between Ali Mohamed and Al-Qaeda Cell in Kenya
US intelligence began monitoring Ali Mohamed in the autumn of 1993 (see Autumn 1993). The San Francisco Chronicle will later report that from “1994 to 1998… FBI agents trace phone calls from Mohamed’s California residences in Santa Clara and, later, Sacramento to bin Laden associates in [Nairobi, Kenya].” In late 1994, FBI agents discover that Mohamed is temporarily living in an al-Qaeda safe house in Nairobi. The FBI contacts him there and he returns to the US a short time later to be interviewed by the FBI (see December 9, 1994). [San Francisco Chronicle, 9/21/2001] When Mohamed is making arrangements to be interviewed by the FBI, he uses the telephone of Wadih El-Hage, bin Laden’s personal secretary who is part of the Kenya al-Qaeda cell. [United States of America v. Usama Bin Laden, et al., Day 39, 5/3/2001] By 1996, US intelligence is continually monitoring five telephone lines in Nairobi used by the cell members, including those belonging to El-Hage (see April 1996).
Late 1994 or 1995: Islamic Jihad Head Fundraises in US Again
Ali Mohamed helps Ayman al-Zawahiri enter the US for another fundraising tour and acts as his head of security during his stay. At the time, al-Zawahiri is known to have been the head of the militant group Islamic Jihad since the late 1980’s. He is also al-Qaeda’s de facto number two leader, though this is not widely known. This is apparently his third visit to the US after recruiting and fundraising trips in 1989 and 1993 (see Spring 1993) . [New Yorker, 9/9/2002] Al-Zawahiri travels on a passport forged by Mohamed and uses a false name. He pretends to be a doctor for a charity raising money for refugees in Afghanistan, but in fact raises money for his Islamic Jihad group. Some donors know his true purpose, and others do not. According to one security expert, he is also in the US “to see whom he could recruit here, what could be done here—preparing the establishment of a base.” Mohamed and Khaled Abu el-Dahab (see 1987-1998), the two known members of a Santa Clara, California, based al-Qaeda sleeper cell, host al-Zawahiri in Santa Clara and escort him to nearby mosques in Santa Clara, Stockton, and Sacramento. [San Francisco Chronicle, 10/11/2001; Chicago Tribune, 12/11/2001] He spends weeks in the US, traveling to other states such as Texas and New York to raise money from mosques there as well. He raises as much as $500,000. El-Dahab is later told some of the money collected is used later in the year to fund bombing of Egyptian Embassy in Islamabad, Pakistan, killing 17 diplomats (see November 19, 1995). [San Francisco Chronicle, 10/11/2001] Accounts on the timing of the trip are vague, and differ as to whether it took place in late 1994 or some time in 1995. Perhaps coincidentally, Mohammed Jamal Khalifa, bin Laden’s brother-in-law, is arrested in mid-December 1994 in Morgan Hill, California, approximately 30 miles from Santa Clara. The FBI finds and quickly translates literature in Khalifa’s luggage advocating training in assassination, explosives, and weapons, bombing churches, and murdering Catholic priests, but seemingly inexplicably, they deport him a few months later (see December 16, 1994-May 1995). Two directors of President Clinton’s National Security Council’s counterterrorism team later will claim that they did not learn of al-Zawahiri’s trips until 1999, and even then they only learned about it by accident and were unable to get the FBI to reveal any more about the trips (see 1999).
December 1994-January 1995: US Prosecutor Possibly Tells Ali Mohamed to Ignore Subpoena
In December 1994, defense attorney Roger Stavis is preparing to defend his client El Sayyid Nosair in the upcoming landmarks trial. He discovers the top secret US military training manuals found in Nosair’s house and begins investigating Ali Mohamed, the US soldier (and double agent) who stole the manuals and gave them to Nosair. Stavis wants to defend Nosair on the basis that since Nosair was trained by Mohamed, who worked for the CIA and US military, the US government should share culpability for Nosair’s crimes. He writes up a subpoena for Mohamed. Stravis later recalls, “I wanted him. And I tried everything to find him.” But Mohamed has disappeared and not even his wife in California knows where he is. However, US intelligence is secretly monitoring him (see Autumn 1993) and they know he is in Kenya. An FBI agent calls him there and tells him to come back to be interviewed. Mohamed immediately returns to the US and on December 9 he is interviewed by FBI agent Harlan Bell and Assistant US Attorney Andrew McCarthy, one of the prosecutors for the upcoming trial (see December 9, 1994). Mohamed stays in touch after the interview, for instance talking to McCarthy on the phone on December 22. But when the trial starts on January 30, 1995, Stavis is told that Mohamed cannot be found and never responded to the subpoena. In 1999, Ibrahim El-Gabrowny, Nosair’s cousin, will find himself in a jail cell next to Mohamed. El-Gabrowny will later allege that he asked why Mohamed never showed up in court to support Nosair. Mohamed supposedly responds that he did get the subpoena, but that McCarthy advised him to ignore it and not testify and that McCarthy would cover up for him. Had Mohamed testified, McCarthy would have had a more difficult time getting a conviction, and the revelations of Mohamed’s ties to the CIA, FBI, and US military would have been highly embarrassing. Author Peter Lance will later note also that had Mohamed testified in the high profile trial, he would have become too well known to continue working as an informant and double agent. [Lance, 2006, pp. 171-178]
December 9, 1994: Ali Mohamed Interviewed by FBI Again, Admits Personal Bin Laden Ties
Prosecutors in the “Landmarks” bombing trial want to speak with Ali Mohamed. FBI agents, working through an intermediary, track him to an al-Qaeda safe house in Nairobi. Mohamed will later testify in US court: “In late 1994, I received a call from an FBI agent who wanted to speak to me about the upcoming trial of United States vs. Abdul Rahman. I flew back to the United States, spoke to the FBI, but didn’t disclose everything that I knew.” [Washington File, 5/15/2001; Wall Street Journal, 11/26/2001; 9/11 Commission, 6/16/2004] FBI agent Harlan Bell conducts the interview in the presence of Assistant US Attorney Andrew McCarthy, a prosecutor for the upcoming trial. Mohamed tells them
that he is working in Kenya in the scuba diving business, when in fact he is helping the al-Qaeda cell there. He also says he went to Pakistan in 1991 to help Osama bin Laden move from Afghanistan to Sudan (see Summer 1991). Despite admitting this tie to bin Laden, there will apparently be no repercussions for Mohamed, aside from his name appearing on the trial’s unindicted co-consipirators list (see February 1995). [Lance, 2006, pp. 173-174] He will not appear at the trial, and it will be alleged that McCarthy told him to ignore a subpoena and not testify (see December 1994-January 1995). Mohamed will recall that after the interview, “I reported on my meeting with the FBI to [al-Qaeda leader Mohammed Atef] and was told not to return to Nairobi.” [Washington File, 5/15/2001]
December 16, 1994-May 1995: Osama’s Brother-in-Law Khalifa Is Arrested in US
Mohammed Jamal Khalifa, a brother-in-law to bin Laden, is arrested in the US. He is held for visa fraud, but he is believed to be a major terrorist. His arrest takes place at a Holiday Inn in Morgan Hill, California. [San Francisco Chronicle, 10/24/2001] That is only about 20 miles from Santa Clara, where double agent Ali Mohamed is running an al-Qaeda cell (see 1987-1998). Counterterrorism expert Steven Emerson will later say of Khalifa and Mohamed, “It seems to me that they were probably in contact. I’m basing that only intuitively on the fact that they were in the same area, they were close to bin Laden, and they would’ve had an incentive to stay together.” [Lance, 2006, pp. 167] According to one account, Khalifa is arrested on behalf of the government of Jordan, because he is on trial there. [San Francisco Chronicle, 10/24/2001] Another account claims that Philippine authorities “tipped off Federal authorities on Khalifa’s movements.” [Filipino Reporter, 4/27/1995] He is traveling on a Saudi passport. He’d flown into the US from London on December 1 and has papers indicating he would be heading back to the Philippines. [Lance, 2006, pp. 158-159] It has been claimed that the CIA helped him get his US visa (see December 1, 1994). There are many reasons for US authorities to suspect Khalifa is a major terrorist figure: 
He is arrested with Mohammed Loay Bayazid, one of the dozen or so original members of al-Qaeda. Bayazid had attempted to purchase nuclear material for bin Laden the year before (see December 16, 1994). Philippine investigators had recently completed a secret report on terrorist funding. The report focuses on Khalifa, and says his activities in the Philippines strongly link with Muslim extremist movements in Iraq, Jordan, Turkey, Russia, Malaysia, the United Arab Emirates, Romania, Lebanon, Syria, Pakistan, Albania, the Netherlands, and Morocco. It calls a charity which Khalifa runs a “pipeline through which funding for the local extremists is being coursed.” Perhaps not coincidentally, the report was released just one day before Khalifa’s arrest in the US (see December 15, 1994). His possessions, which are quickly examined and translated, include a handwritten manual in Arabic detailing how to set up a terrorist curriculum at a school in the Philippines, giving lessons in bomb-making and assassination. [San Francisco Chronicle, 10/24/2001] Khalifa’s business card was discovered in a search of the New York City residence of Sheikh Omar Abdul-Rahman in 1993 (see August 1993). He is an unindicted coconspirator in the “Landmarks” bombings plot, which would have killed thousands in New York City. The trial is getting underway at this time. Abdul-Rahman will be convicted and sentenced to over 300 years in prison (see June 24, 1993). A State Department cable from days after his arrest states Khalifa is a “known financier of terrorist operations and an officer of an Islamic NGO in the Philippines that is a known Hamas front.” An alias is found in his personal organizer that was also used in a bomb-making manual brought into the US by Ahmad Ajaj, Ramzi Yousef’s travel partner, when the two of them came to the US to implement the 1993 World Trade Center bombing (see September 1, 1992). Bojinka plotter Wali Khan Amin Shah’s phone number is found in Khalifa’s possessions. The Bojinka plot, if successful, also would have killed thousands (see January 6, 1995). [Lance, 2006, pp. 158-159] A number in Pakistan that Ramzi Yousef had used to call the Philippines is found as well. Author Peter Lance will later note that such numbers “should have led the FBI directly to Ramzi Yousef, the world’s most wanted man” at the time. [Lance, 2006, pp. 160]
However, despite this wealth of highly incriminating material, within weeks of his arrest the US will decide to deport him to Jordan (see January 5, 1995). Over the next four months, even more of his links to terrorist activity will be discovered (see Late December 1994-April 1995). But Khalifa will be deported anyway (see April 26-May 3, 1995), and then soon freed in Jordan (see July 19, 1995).
