In January 1995 the Bojinka plot is foiled in the Philippines and on February 7, 1995, Ramzi Yousef is arrested in Pakistan (see February 7, 1995), but Yousef’s uncle Khalid Shaikh Mohammed (KSM) continues to live in the Philippines much of the time. KSM remains confident that he will not be arrested, and eats at a particular restaurant in Manila at roughly the same time almost every night. In early 1996, the FBI and Philippine authorities attempt to arrest KSM at Bandido’s restaurant. But counterterrorism expert Rohan Gunaratna will later claim the “operation failed apparently due to the visibility of the FBI and other agents working on the case.” KSM flees to Qatar, where he was been living off and on since 1992 (see 1992-1996). But Gunaratna claims KSM continues to live part of the time in the Philippines as well until about September 1996. [Gunaratna, 2003]
June 1996: Informant’s Clues Point to KSM
While al-Qaeda operative Jamal al-Fadl gives a treasure trove of useful information on al-Qaeda to US intelligence (see June 1996-April 1997), one person he describes in detail is Wali Khan Amin Shah. Shah was one of the plotters of the Operation Bojinka plot (see February 7, 1995). Al-Fadl reveals that Shah has al-Qaeda ties. Author Peter Lance notes that US intelligence should have concluded that Shah’s fellow Operation Bojinka plotter, Khalid Shaikh Mohammed (KSM), also has al-Qaeda ties. However, there is no new effort to find KSM, and he later goes on to mastermind the 9/11 attacks. [Lance, 2003, pp. 330-31]
Mid-1996-September 11, 2001: KSM Travels World; Involved in Many Al-Qaeda Operations
After fleeing Qatar, Khalid Shaikh Mohammed (KSM) travels the world and plans many al-Qaeda operations. He previously was involved in the 1993 World Trade Center bombing, and the Operation Bojinka plot. [Time, 1/20/2003] He is apparently involved in the 1998 US embassy bombings (see 10:35-10:39 a.m., August 7, 1998), the 2000 USS Cole bombing (see October 12, 2000), and other attacks. One US official later says, “There is a clear operational link between him and the execution of most, if not all, of the al-Qaeda plots over the past five years.” [Los Angeles Times, 12/22/2002] He lives in Prague, Czech Republic, through much of 1997. [Los Angeles Times, 9/1/2002] By 1999, he is living in Germany and visiting with the hijackers there. [New York Times, 6/8/2002; New York Times, 9/22/2002] Using 60 aliases and as many passports, he travels through Europe, Africa, the Persian Gulf, Southeast Asia and South America, personally setting up al-Qaeda cells. [Los Angeles Times, 12/22/2002; Time, 1/20/2003]
1997 or After: Responsibility for KSM Transferred to Renditions Branch at CIA
After a renditions branch is established at the CIA in 1997, responsibility at the agency for dealing with Khalid Shaikh Mohammed (KSM) is transferred there. This is because he is wanted in connection with the Bojinka plot (see January 8, 1998). The 9/11 Commission will say that this both improves the CIA’s coverage of KSM—because it gives them a “man-to-man” focus—and also degrades it—as less analysis is performed related to rendition targets. [9/11 Commission, 7/24/2004, pp. 276-7] The CIA’s inspector general will say that at this time the agency’s Counterterrorist Center considers KSM a “high-priority target for apprehension and rendition,” but will fail to recognize the importance of reporting from “credible sources” before 9/11 that shows he is a top al-Qaeda leader and is sending other terrorists to the US to work for Osama bin Laden (see June 12, 2001 and August 28, 2001). The inspector general will recommend that an accountability board review the performance of at least four officers for these failures. [Central Intelligence Agency, 6/2005, pp. xii-xiii 
]
Early 1998: CIA Ignores Ex-Agent’s Warning KSM Is ‘Going to Hijack Some Planes,’ Visiting Germany
In December 1997, former CIA agent Robert Baer, newly retired from the CIA and working as a terrorism consultant, meets Hamad bin Jassim bin Hamad al Thani, who was Qatar’s minister of the economy and chief of police until he was deposed and exiled the year before, and whom he calls the “black prince.” Al Thani tells Baer that Khalid Shaikh Mohammed (KSM) was being sheltered by then Qatari Interior Minister Abdallah bin Khalid al-Thani in 1996 (see January-May 1996). However, the black prince knows other details, based on what Qatari police and intelligence learned when KSM was in the country. He says that KSM is chief of al-Qaeda’s terrorist operations (see Early 1998). KSM was leading an al-Qaeda cell in Qatar together with Mohammed Shawqui Islambouli, the brother of the Egyptian who had killed Anwar Sadat. They also were linked to bomber Ramzi Yousef. But what worries the black prince is that KSM and Islambouli are experts in hijacking commercial planes. He tells Baer that KSM “is going to hijack some planes.” Further, he says that KSM has moved to the Czech Republic, and has also traveled to Germany to meet bin Laden associates there. In early 1998 Baer sends this information to a friend in the CIA Counterterrorist Center, who forwards the information to his superiors. Baer doesn’t hear back from the CIA. He says, “There was no interest.” [Baer, 2002, pp. 270-71; Vanity Fair, 2/2002; United Press International, 9/30/2002; Baer, 2003, pp. 190-198] Later in 1998, President Clinton will be briefed about a hijacking threat in the US involving Islambouli, but it is unclear if Islambouli was actually involved in the 9/11 plot or any other hijacking plots targeting the US (see December 4, 1998). He will not have been captured by March 2008. Baer tries to interest reporter Daniel Pearl in a story about KSM before 9/11, but Pearl will still be working on it when he is kidnapped and later murdered in early 2002. [United Press International, 4/9/2004] Baer also tries to interest New York Times reporter James Risen in the information about KSM. But just before Risen can come to the Middle East to meet the black prince, the black prince is kidnapped in Lebanon and sent to prison in Qatar. There will be speculation that the CIA turned on the source to protect its relationship with the Qatari government. Risen will publish an article in July 1999 about KSM, but it will not include most of the information from the black prince, since Risen will not be able to confirm it. [New York Times, 7/8/1999; BBC, 7/25/1999; Gertz, 2002, pp. 55-58; Baer, 2003, pp. 190-198] Al-Thani will continue to support al-Qaeda, even hosting visits by bin Laden between 1996 and 2000 (see 1996-2000). [ABC News, 2/7/2003] Yet the US will not have frozen al-Thani’s assets or taken other action by March 2008.
Early 1998: CIA Ignores Warning that KSM Is Heading Al-Qaeda’s Terrorist Operations
The CIA apparently ignores a warning from a recently retired CIA agent that Khalid Shaikh Mohammed (KSM) is heading al-Qaeda’s terrorist operations. Robert Baer left the CIA in late 1997 and began private consulting in the Middle East. Baer soon meets Hamad bin Jassim bin Hamad al Thani, who was Qatar’s minister of the economy and chief of police until he was deposed and exiled the year before. Al Thani tells Baer that KSM is now bin Laden’s chief of terrorist operations, and gives Baer other details about KSM, including how some Qatari royals helped KSM escape Qatar the year before after the CIA tracked him there (see January-May 1996 and Early 1998). In early 1998, Baer passes all this information on to a friend still in the CIA, who then passes it on to the CIA’s Counterterrorist Center. But the friend writes back a week later, saying the CIA showed no interest. [Baer, 2003, pp. 190-198] The 9/11 Commission, by contrast, will later claim that, in 1997 and 1998, KSM has some links with al-Qaeda, but mostly helps them collect newspaper articles and update computer equipment. Supposedly, not until after the August 1998 embassy bombings does he begin working directly with al-Qaeda on plotting attacks. This account appears entirely based on KSM’s testimony taken while in US custody. [9/11 Commission, 7/24/2004, pp. 149-150] It will later be reported that up to 90 percent of KSM’s testimony could be inaccurate, mostly due to the use of torture (see Late August 1998). Further, the CIA gained evidence shortly after the embassy bombings that KSM was one of the masterminds of those bombings, which would strongly support Baer’s information over the 9/11 Commission version (see August 6, 2007).
Early 1998: Prosecutors Turn Down Deal That Could Reveal Bojinka Third Plot
Abdul Hakim Murad, a conspirator in the 1995 Bojinka plot with Ramzi Yousef, Khalid Shaikh Mohammed (KSM), and others, was convicted in 1996 of his role in the Bojinka plot (see January 6, 1995). He is about to be sentenced for that crime. He offers to cooperate with federal prosecutors in return for a reduction in his sentence, but prosecutors turn down his offer. Dietrich Snell, the prosecutor who convicted Murad, will say after 9/11 that he does not remember any such offer. But court papers and others familiar with the case later confirm that Murad does offer to cooperate at this time. Snell will claim he only remembers hearing that Murad had described an intention to hijack a plane and fly it into CIA headquarters. However, in 1995 Murad had confessed to Philippine investigators that this would have been only one part of a larger plot to crash a number of airplanes into prominent US buildings, including the World Trade Center and the Pentagon, a plot that KSM later will adjust and turn into the 9/11 plot (see January 20, 1995)
(see February-Early May 1995). While Philippine investigators claim this information was passed on to US intelligence, it’s not clear just which US officials may have learned this information and what they did with it, if anything. [New York Daily News, 9/25/2001] Murad is sentenced in May 1998 and given life in prison plus 60 years. [Albany Times-Union, 9/22/2002] After 9/11, Snell will go on to become Senior Counsel and a team leader for the 9/11 Commission. Author Peter Lance later calls Snell “one of the fixers, hired early on to sanitize the Commission’s final report.” Lance says Snell ignored evidence presented to the Commission that shows direct ties between the Bojinka plot and 9/11, and in so doing covers up Snell’s own role in the failure to make more use of evidence learned from Murad and other Bojinka plotters. [FrontPage Magazine, 1/27/2005]
January 8, 1998: KSM Revealed as Major Al-Qaeda Operative at Yousef Sentencing
Islamic militant Ramzi Yousef is sentenced to 240 years for his role in the 1993 WTC bombing. At the same time, prosecutors unseal an indictment against Khalid Shaikh Mohammed (KSM) for participating with Yousef in the 1995 Operation Bojinka plot (see January 6, 1995). In unsealing this, US Attorney Mary Jo White calls KSM a “major player” and says he is believed to be a relative of Yousef. [Washington Post, 1/9/1998] The US announces a $2 million reward for his capture in 1998 and wanted posters with his picture are distributed. [New York Times, 6/5/2002] This contradicts the FBI’s claim after 9/11 that they did not realize he was a major terrorist before 9/11. [US Congress, 12/11/2002] For instance, a senior FBI official later says, “He was under everybody’s radar. We don’t know how he did it. We wish we knew.… He’s the guy nobody ever heard of.” [Los Angeles Times, 12/22/2002] However, another official says, “We have been after him for years, and to say that we weren’t is just wrong. We had identified him as a major al-Qaeda operative before September 11.” [New York Times, 9/22/2002] Yet strangely, despite knowing KSM is a major al-Qaeda operations planner and putting out a large reward for his capture at this time, there is no worldwide public manhunt for him as there successfully was for his nephew Ramzi Yousef. KSM’s name remains obscure and he isn’t even put on the FBI’s Most Wanted Terrorists list until one month after 9/11. [Lance, 2003, pp. 327-30]
Summer 1998: KSM Travels to the US until at Least This Time
In June 2001, a CIA cable describing background information on bin Laden’s associates will mention that 9/11 mastermind Khalid Shaikh Mohammed (KSM) is regularly traveling to the US. The CIA’s Renditions Branch had been looking for KSM since at least 1997. In July 2001, the source of this information will positively identify KSM’s photo from a line up and clarify that the last known time KSM went to the US was in the summer of 1998 (see June 12, 2001). Presumably, KSM may have been more reluctant to travel to the US after the crackdown on al-Qaeda in the wake of the August 1998 embassy bombings (see 10:35-10:39 a.m., August 7, 1998). [9/11 Commission, 7/24/2004, pp. 277, 533] In May 1995, the FBI learned that KSM had been in the US, had a current and valid US visa, and was planning to come back to the US, possibly to take flying lessons (see April-May 1995). Additionally, KSM will receive a new US visa on July 23, 2001, though it isn’t known if he ever uses it (see July 23, 2001).
June 1998: KSM Almost Caught in Brazil; Using Exposed Bojinka Front Company as Cover
Khalid Shaikh Mohammed (KSM) is almost caught in Brazil. Apparently, the Malaysian government discovers that KSM is in the country using an alias and an Egyptian passport, and that he has obtained a Brazilian visa. So on June 25, 1998, the US asks Brazil to help capture him. A former US official will later say, “We were fairly convinced… that he was there” in the town of Foz de Iguazu, a criminal haven that he had visited at least once before (see December 1995). [Los Angeles Times, 12/22/2002; Knight Ridder, 3/13/2003] However, KSM gets away. Time magazine reporter Tim McGirk will later claim, “They almost nailed him in Brazil. They knew that he’d left from Malaysia to Brazil….” [National Public Radio, 3/3/2003] “He had supposedly gone there to promote Konsonjaya, a Malaysian company that secretly funded Muslim rebels in Southeast Asia.” [Playboy, 6/1/2005] Konsonjaya was the front company used for the Bojinka plot in 1995 (see January 6, 1995 and June 1994), and it supposedly dealt in Sudanese honey and palm oil. [Los Angeles Times, 2/7/2002; Financial Times, 2/15/2003] The Telegraph, in an apparent reference to Konsonjaya, will later report that KSM “acted as financier and coordinator, through another [Malaysian company] which traded Sudanese honey. He traveled widely, including at least one trip to Brazil….” [Daily Telegraph, 3/2/2003] The honey distribution business had a base in Karachi, Pakistan, and employed KSM’s nephew Ali Abdul Aziz Ali (a.k.a. Ammar al-Baluchi). [US Department of Defense, 4/12/2007, pp. 17 ] It is remarkable that KSM would be connected to this company in 1998, considering that the company’s records were introduced as evidence in a public trial of some Bojinka plotters in 1996. [Los Angeles Times, 2/7/2002]
