In 1985, US Congress passes legislation requiring US economic sanctions on Pakistan unless the White House can certify that Pakistan has not embarked on a nuclear weapons program (see August 1985 and August 1985). The White House certifies this every year until 1990 (see 1987-1989). However, it is known all the time that Pakistan does have a continuing nuclear program. For instance, in 1983 a State Department memo said Pakistan clearly has a nuclear weapons program that relies on stolen European technology. Pakistan successfully builds a nuclear bomb in 1987 but does not test it to keep it a secret (see 1987). With the Soviet-Afghan war ending in 1989, the US no longer relies on Pakistan to contain the Soviet Union. So in 1990 the Pakistani nuclear program is finally recognized and sweeping sanctions are applied (see June 1989). [Gannon, 2005] Journalist Seymour Hersh will comment, “The certification process became farcical in the last years of the Reagan Administration, whose yearly certification—despite explicit American intelligence about Pakistan’s nuclear-weapons program—was seen as little more than a payoff to the Pakistani leadership for its support in Afghanistan.” [New Yorker, 3/29/1993] The government of Pakistan will keep their nuclear program a secret until they successfully test a nuclear weapon in 1998 (see May 28, 1998).
1986-1992: CIA and British Recruit and Train Militants Worldwide to Help Fight Afghan War
Following an agreement between the CIA and Pakistan’s ISI to make more use of Arabs in the Soviet-Afghan War, recruitment of potential fighters increases significantly. The agreement was a result of CIA dissatisfaction at infighting between indigenous Afghan rebels (see 1985-1986). According to Australian journalist John Pilger, in this year: “CIA Director William Casey [gives] his backing to a plan put forward by Pakistan’s intelligence agency, the ISI, to recruit people from around the world to join the Afghan jihad. More than 100,000 Islamic militants [are] trained in Pakistan between 1986 and 1992, in camps overseen by the CIA and [the British intelligence agency] MI6, with the [British special forces unit] SAS training future al-Qaeda and Taliban fighters in bomb-making and other black arts. Their leaders [are] trained at a CIA camp in Virginia.” [Guardian, 9/20/2003] Eventually, around 35,000 Muslim radicals from 43 Islamic countries will fight with the Afghan mujaheddin. Tens of thousands more will study in the hundreds of new madrassas (Islamic schools) funded by the ISI and CIA in Pakistan. Their main logistical base is in the Pakistani city of Peshawar. [Washington Post, 7/19/1992; Pittsburgh Post-Gazette, 9/23/2001] Ironically, although many are trained, it seems only a small percentage actually take part fight in serious fighting in Afghanistan, so their impact on the war is small. [New Yorker, 9/9/2002] Richard Murphy, assistant secretary of state for Near East and South Asian relations during the Reagan administration, will later say: “We did spawn a monster in Afghanistan. Once the Soviets were gone [the people trained and/or funded by the US] were looking around for other targets, and Osama bin Laden has settled on the United States as the source of all evil. Irony? Irony is all over the place.” [Associated Press, 8/23/1998] In the late 1980s, Pakistani Prime Minister Benazir Bhutto, feeling the mujaheddin network has grown too strong, tells President George H. W. Bush, “You are creating a Frankenstein.” However, the warning goes unheeded. [Newsweek, 10/1/2001] By 1993, President Bhutto tells Egyptian President Hosni Mubarak that Peshawar is under de facto control of the mujaheddin, and unsuccessfully asks for military help in reasserting Pakistani control over the city. Thousands of mujaheddin fighters return to their home countries after the war is over and engage in multiple acts of violence. One Western diplomat notes these thousands would never have been trained or united without US help, and says, “The consequences for all of us are astronomical.” [Atlantic Monthly, 5/1996]
Early 1986: CIA Aware of Bin Laden’s Activities in Pakistan; Knows He Is ‘Tapping into’ CIA-Backed Operation
The CIA is aware of Osama bin Laden’s operations in Afghanistan by this point, at the latest. The CIA learns that bin Laden has stepped up his support for the anti-Soviet mujaheddin by helping to establish a network of guesthouses along the Afghan frontier, not for local fighters, but for Arabs arriving to help out the Afghans. The network is centered in the border city of Peshawar, where bin Laden is “spreading large sums of money around.” According to author Steve Coll, the CIA also knows that bin Laden is “tapping into” camps run by Pakistan’s ISI intelligence agency and funded by the CIA to train anti-Soviet fighters. Reports of this activity are passed to the CIA’s Counterterrorist Center. Stanley Bedington, a senior analyst at the center, will later say, “When a man starts throwing around money like that, he comes to your notice.” He will also say that at this time bin Laden was “not a warrior,” and that he was “not engaged in any fighting.” [Coll, 2004, pp. 146]
Late 1980s: Bin Laden, CIA, and ISI Train Core of Future Philippines Militant Group
The core of the future Philippine militant group Abu Sayyaf fights with bin Laden in Afghanistan and its training there is paid for by the CIA and Pakistani ISI. In 1986, the CIA agreed to support an ISI program of recruiting radical Muslims from other countries, including the Philippines, to fight in the Afghan war (see 1985-1986). By one estimate, initially between 300 and 500 radical Muslims from the southern Philippines go to Afghanistan to fight. [Strategic Studies Institute of the US Army War College, 9/1/2005 
] In 1987 or 1988, bin Laden dispatches his brother-in-law Mohammed Jamal Khalifa to the Philippines to find more recruits willing to go to Afghanistan. It is estimated he finds about 1,000 recruits. One of them is Abdurajak Janjalani, who emerges as the leader of these recruits in Afghanistan. When the Afghan war ends in 1989 most of them will return to the Philippines and form the Abu Sayyaf group, still led by Janjalani (see Early 1991). [Contemporary Southeast Asia, 12/1/2002; Manila Times, 2/1/2007] Journalist John Cooley will write in a book first published in 1999 that Abu Sayyaf will become “the most violent and radical Islamist group in the Far East, using its CIA and ISI training to harass, attack, and murder Christian priests, wealthy non-Muslim plantation-owners, and merchants and local government in the southern Philippine island of Mindanao.” [Cooley, 2002, pp. 63] After having read Cooley’s book and gathering information from other sources, Senator Aquilino Pimentel, President of the Philippine Senate, will say in a 2000 speech that the “CIA has sired a monster” because it helped train this core of the Abu Sayyaf. [Senator Aquilino Q. Pimentel website, 7/31/2000]
1987: Pakistan Secretly Builds Nuclear Weapon
Pakistan successfully builds a nuclear weapon around this year. The bomb is built largely thanks to the illegal network run by A. Q. Khan. Pakistan will not actually publicly announce this or test the bomb until 1998 (see May 28, 1998), partly because of a 1985 US law imposing sanctions on Pakistan if it were to develop nuclear weapons (see August 1985-October 1990). [Hersh, 2004, pp. 291] However, Khan will tell a reporter the program has been successful around this time (see March 1987).
1987: CIA Funds Mujahedeen Leader Who Supports Bin Laden
Shortly after 1986, mujahedeen leader Jalaluddin Haqqani becomes a direct asset of the CIA, according to author Steve Coll. The CIA is already supporting other mujahedeen leaders by paying cash to the ISI, Pakistan’s intelligence agency, which in turn gives money to the leaders. But Haqqani is a rare case of the CIA working with an Afghan leader without going through the ISI. But at the same time, the ISI also heavily supports and funds Haqqani. At this time, Osama bin Laden and other Arabs fighting in Afghanistan are based in territory controlled by Haqqani, so the CIA support for Haqqani also benefits bin Laden and other radical Islamists fighting with him. Bin Laden will later call Haqqani a “hero” and “one of the foremost leaders of the jihad against the Soviets.” Coll will later write: “Haqqani traveled frequently to Peshawar to meet with a Pakistani and, separately, with an American intelligence officer, and to pick up supplies. Osama would have no reason to know about Haqqani’s opportunistic work with the CIA, but he and his Arab volunteers benefited from it. They stood apart from the CIA’s cash-laden tradecraft—but just barely.” It is not known how long the relationship between the CIA and Haqqani lasts. [Coll, 2008, pp. 285, 294] However, he is so liked by the US that at one point he visits the White House during Ronald Reagan’s presidency. [Associated Press, 12/29/2009] Haqqani will later join the Taliban, and then he will start his own militant group linked to the Taliban known as the Haqqani network. In 2008, the New York Times will report: “Today [Haqqani] has turned his expertise on American and NATO forces. From his base in northwestern Pakistan, [he] has maintained a decades-old association with Osama bin Laden and other Arabs. Together with his son, Sirajuddin Haqqani, 34, he and these allies now share a common mission to again drive foreign forces from Afghanistan.” [New York Times, 6/17/2008] Haqqani also will maintain his link to the ISI. In 2008, US intelligence will overhear the head of Pakistan’s military calling Haqqani a “strategic asset” (see May 2008).
April 1987: Hamid Gul Becomes Head of ISI
Gen. Hamid Gul is made head of Pakistan’s ISI. [Yousaf and Adkin, 1992, pp. 91-92] General Gul is a favorite of CIA Station Chief Milt Bearden and US ambassador to Pakistan Arnie Raphel, who view him as an ally and a potential national leader of Pakistan. [Bearden and Risen, 2003, pp. 301] According to Bearden, however, he will later (sometime after 1990) turn against the US. [Bearden and Risen, 2003, pp. 358, 523-524] Evidence will later appear that in the late 1990s Gul is somehow able to give the Taliban advanced warning of US attempts to assassinate bin Laden with missile strikes (see July 1999). In 2004, allegations will appear in the US media that Gul was a key participant in the 9/11 plot and “bin Laden’s master planner” (see July 22, 2004).
1988-Spring 1995: KSM’s Brother Works for Charity Allegedly Connected to CIA
Zahid Shaikh Mohammed, the brother of 9/11 mastermind Khalid Shaikh Mohammed (KSM), works as the head of the Pakistani branch of the charity Mercy International. A book published in 1999 will allege that this charity, based in the US and Switzerland, was used by the CIA to funnel money to Muslim militants fighting against US enemies in places such as Bosnia and Afghanistan (see 1989 and After). It is not known when Zahid got involved with the charity, but he is heading its Pakistani branch by 1988, when his nephew Ramzi Yousef first goes to Afghanistan (see Late 1980s). [Reeve, 1999, pp. 120] In the spring of 1993, US investigators raid Zahid’s house while searching for Yousef (see Spring 1993). Documents and pictures are found suggesting close links and even a friendship between Zahid and Osama bin Laden. Photos and other evidence also show close links between Zahid, KSM, and government officials close to Nawaf Sharif, who is prime minister of Pakistan twice in the 1990s. The investigators also discover that Zahid was seen talking to Pakistani President Farooq Ahmad Khan Leghari during a Mercy International ceremony in February 1993. [Reeve, 1999, pp. 48-49, 120] But despite the raid, Zahid apparently keeps his job until about February 1995, when Yousef is arrested in Pakistan (see February 7, 1995). Investigators learn Yousef had made a phone call to the Mercy office, and there is an entry in Yousef’s seized telephone directory for a Zahid Shaikh Mohammed. Pakistani investigators raid the Mercy office, but Zahid has already fled. [United Press International, 4/11/1995; Guardian, 9/26/2001; McDermott, 2005, pp. 154, 162] It is unclear what subsequently happens to Zahid. In 1999 it will be reported that he is believed to be in Kuwait, but in 2002 the Kuwaiti government will announce he is a member of al-Qaeda, so presumably he is no longer welcome there. [Reeve, 1999, pp. 48; Los Angeles Times, 9/1/2002] Mercy International’s Kenya branch will later be implicated in the 1998 US embassy bombing in that country, as will KSM, Zahid’s brother (see Late August 1998).
April 10, 1988: Munitions Explosion Hides Evidence US Aid to Mujaheddin Is Really Funding A. Q. Khan’s Nuclear Program
In the 1980s, Pakistani ISI Director Akhtar Abdur Rahman was supervising a secret trade in which CIA weapons meant to go to mujaheddin fighting the Soviets in Afghanistan were sold to others by the ISI. The profits were then used to fund the Kahuta Research Laboratories, which A. Q. Khan was using to develop a Pakistani nuclear bomb (see 1980s). To disguise where the weapons were coming from, the CIA bought Soviet-made weapons on the black market and then shipped them to the ISI. The ISI stored them at an arms depot in Ojiri, near the town of Rawalpindi. By 1988, the US finally demands an independent audit of the depot, after persistent reports of corruption. On April 10, 1988, several weeks before US inspectors are to arrive, the arms depot blows up. The explosion is so massive that it kills 100 and injures over 1,000. The Pakistani government will officially determine the explosion was an accident. However, Hamid Gul, who became ISI director in 1987 (see April 1987), will conduct a secret audit for the ISI about the explosion and confirm that it was caused by sabotage to hide the massive theft of munitions. The US ambassador to Pakistan will estimate that about $125 million worth of explosives are destroyed in the blast. [Levy and Scott-Clark, 2007, pp. 131-132]
August 17, 1988: Pakistani President Zia Killed in Plane Crash
Pakistan’s president Muhammad Zia ul-Haq is killed in an airplane crash. The plane went into a steep dive, then recovered regaining altitude. Then it dove a second time and crashed. [Yousaf and Adkin, 1992, pp. 91-92] ISI Director Akhtar Abdur Rahman, US ambassador to Pakistan Arnold Raphel, and other Pakistani and US officials are also killed. A joint US-Pakistani investigation fails to definitively explain what caused the crash. [Coll, 2004, pp. 178-179] According to Mohammad Yousaf, the ISI’s Afghan Bureau chief, the crash was due to sabotage. Yousaf does not know who was responsible, but later says that the US State Department was instrumental in the cover-up. Yousaf points out several reasons why the State Department might want to cover up the crime even if the US were not involved in the assassination itself. [Yousaf and Adkin, 1992, pp. 91-92] Richard Clarke, a State Department analyst who later will become counterterrorism “tsar” for Presidents Clinton and Bush Jr., believes that Zia’s death and the destruction of a major weapons stockpile used by the CIA and ISI around the same time (see April 10, 1988) were both ordered by the Soviets as revenge for being defeated in Afgnanistan. Clarke says, “I could never find the evidence to prove that the Soviet KGB had ordered these two acts as payback for their bitter defeat, but in my bones I knew they had.” [Clarke, 2004, pp. 50]
